Quantification of four dark colored mould fungi by real time PCR

IRG/WP 11-10754

E Larnøy, L Ross Gobakken, A M Hietala

Coated wooden claddings in building facades are widely used in the Scandinavian countries, and are often preferred to other materials. Wood is facing increasing competition from other materials that are less labor intensive at the construction site and materials with less demand for maintenance thru service life, and makes further development of wooden claddings essential. Growth of discoloring moulds on exposed coated wooden claddings is mainly of aesthetic concern, and is especially disfiguring for light-colored surfaces. Growth of surface fungi often initiates repeated cleaning and shorter maintenance intervals, which in turn increase the total cost of ownership for wooden claddings. Cost and effort of ownership are often important factors considered when choosing a product, and the traditionally good market situation for wooden claddings is therefore threatened. The development of real-time PCR (polymerase chain reaction) and taxon-specific primers has provided new possibilities for specific detection and quantification of fungi in their natural substrates. In qPCR (quantitative real-time PCR), the accumulation of the PCR product is detected for each amplification cycle. An efficient and reproducible sampling and extraction of DNA is required for a high-throughput qPCR based quantification of discoloring fungi. The authors have now adjusted DNA isolation protocols and optimized real-time PCR assays for species specific detection of fungi frequently found on painted surfaces (Aureobasidium pullulans, Alternaria alternata, Cladosporium cladosporides, Ulocladium atrum).


Keywords: dark colored mould fungi, real time PCR

Conference: 11-05-08/12 Queenstown, New Zealand


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